hcpD protein (Legionella cincinnatiensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

hcpD

Sel1 repeat protein. (376 aa)

Predicted Functional Partners:

Lcin_2703

0.718

putA

0.507

Lcin_0492

0.507

arcB_4

0.488

arcB_1

0.488

evgS_2

0.487

dnaK

0.481

Lcin_2239

0.479

Lcin_0579

0.467

Lcin_0095

0.464

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lcin_0095	Lcin_0492	Lcin_0095	Lcin_0492	PPR repeat protein.	Protein phosphatase 2C.	0.901
Lcin_0095	Lcin_0579	Lcin_0095	Lcin_0579	PPR repeat protein.	PPR repeat protein.	0.738
Lcin_0095	Lcin_2239	Lcin_0095	Lcin_2239	PPR repeat protein.	Hypothetical protein.	0.932
Lcin_0095	Lcin_2703	Lcin_0095	Lcin_2703	PPR repeat protein.	TPR repeat protein.	0.468
Lcin_0095	arcB_1	Lcin_0095	Lcin_2288	PPR repeat protein.	Sensory histidine-kinase / response regulator.	0.987
Lcin_0095	arcB_4	Lcin_0095	Lcin_1051	PPR repeat protein.	Sensory box histidine kinase/response regulator.	0.987
Lcin_0095	dnaK	Lcin_0095	Lcin_2304	PPR repeat protein.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.913
Lcin_0095	evgS_2	Lcin_0095	Lcin_0448	PPR repeat protein.	Sensor histidine kinase.	0.993
Lcin_0095	hcpD	Lcin_0095	Lcin_0397	PPR repeat protein.	Sel1 repeat protein.	0.464
Lcin_0492	Lcin_0095	Lcin_0492	Lcin_0095	Protein phosphatase 2C.	PPR repeat protein.	0.901
Lcin_0492	Lcin_0579	Lcin_0492	Lcin_0579	Protein phosphatase 2C.	PPR repeat protein.	0.906
Lcin_0492	Lcin_2239	Lcin_0492	Lcin_2239	Protein phosphatase 2C.	Hypothetical protein.	0.877
Lcin_0492	Lcin_2703	Lcin_0492	Lcin_2703	Protein phosphatase 2C.	TPR repeat protein.	0.438
Lcin_0492	dnaK	Lcin_0492	Lcin_2304	Protein phosphatase 2C.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.786
Lcin_0492	evgS_2	Lcin_0492	Lcin_0448	Protein phosphatase 2C.	Sensor histidine kinase.	0.429
Lcin_0492	hcpD	Lcin_0492	Lcin_0397	Protein phosphatase 2C.	Sel1 repeat protein.	0.507
Lcin_0579	Lcin_0095	Lcin_0579	Lcin_0095	PPR repeat protein.	PPR repeat protein.	0.738
Lcin_0579	Lcin_0492	Lcin_0579	Lcin_0492	PPR repeat protein.	Protein phosphatase 2C.	0.906
Lcin_0579	Lcin_2239	Lcin_0579	Lcin_2239	PPR repeat protein.	Hypothetical protein.	0.932
Lcin_0579	Lcin_2703	Lcin_0579	Lcin_2703	PPR repeat protein.	TPR repeat protein.	0.492