STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0414Hypothetical protein. (192 aa)    
Predicted Functional Partners:
intS_6
Integrase; Belongs to the 'phage' integrase family.
 
     0.629
AlpA_2
Prophage CP4-57 regulatory protein (AlpA).
 
     0.578
dnaG_1
DNA primase.
     
 0.478
Lcin_0415
MerR family regulatory protein.
       0.475
Lcin_0418
Prophage maintenance system killer protein.
       0.472
hsdM_2
Putative type I restriction enzyme M protein.
       0.467
hsdS
Putative type I restriction-modification system (methylase S subunit).
       0.467
hsdR_2
Putative type I restriction enzyme R protein.
       0.467
Lcin_0417
Hypothetical protein.
       0.466
Lcin_0420
Hypothetical protein.
       0.454
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.