Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lcin_0414Hypothetical protein. (192 aa)    
Predicted Functional Partners:
intS_6
Integrase; Belongs to the 'phage' integrase family.
 
     0.629
AlpA_2
Prophage CP4-57 regulatory protein (AlpA).
 
     0.576
psuK
Carbohydrate kinase, pfkB family.
     
  0.520
glk
Glucokinase; Belongs to the bacterial glucokinase family.
     
  0.485
Lcin_0415
MerR family regulatory protein.
       0.476
Lcin_0418
Prophage maintenance system killer protein.
       0.468
hsdM_2
Putative type I restriction enzyme M protein.
       0.464
hsdS
Putative type I restriction-modification system (methylase S subunit).
       0.464
hsdR_2
Putative type I restriction enzyme R protein.
       0.464
Lcin_0417
Hypothetical protein.
       0.463
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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