STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0438phytanoyl-CoA dioxygenase. (310 aa)    
Predicted Functional Partners:
Lcin_0437
Hypothetical protein.
 
     0.805
Lcin_0439
Hypothetical protein.
       0.802
Lcin_1054
Cytochrome P450.
  
  
  0.774
Lcin_1005
Glycosyl hydrolase family 18; Belongs to the glycosyl hydrolase 18 family.
  
     0.723
Lcin_2476
Ankyrin repeat protein.
  
     0.720
Lcin_2419
Dihydroorotate dehydrogenase electron transfer subunit.
  
     0.703
Lcin_0273
3-deoxy-D-manno-octulosonic-acid kinase.
  
     0.697
Lcin_1503
Putative Glutathione synthetase ATP-binding domain-like protein.
  
     0.693
Lcin_0508
Hypothetical protein.
  
     0.636
Lcin_1507
TfuA-like protein.
  
     0.621
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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