Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0466Hypothetical protein. (230 aa)    
Predicted Functional Partners:
asnB
Asparagine synthetase, glutamine-hydrolyzing.
    
  0.848
ybdK_2-2
Glutamate-cysteine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
       0.659
pheA_2
Chorismate mutase.
    
  0.552
Lcin_1271
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
  0.542
pta
Phosphate acetyl/butaryl transferase.
    
 0.512
pdhB_1
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
    
  0.500
cpsB
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.478
Lcin_0161
Aminoglycoside 3-N-acetyltransferase.
    
  0.450
Lcin_1024
Phosphotransferase enzyme family protein.
    
  0.450
Lcin_2548
Aminoglycoside 3-N-acetyltransferase.
    
  0.450
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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