STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dacCD-Ala-D-Ala carboxypeptidase. (550 aa)    
Predicted Functional Partners:
ldcA
Muramoyltetrapeptide carboxypeptidase.
 
  
  0.514
Lcin_1723
LD-carboxypeptidase.
 
  
  0.484
dacB_2
D-Ala-D-Ala carboxypeptidase.
  
     0.482
dmlR_2
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.476
ftsI
Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
     
 0.470
mrcA
Putative peptidoglycan synthetase, penicillin-binding protein 1A.
     
 0.468
Lcin_3004
Hypothetical protein.
 
  
  0.466
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
     
 0.456
pbpC
Penicillin binding protein 1C.
     
 0.454
Lcin_2470
Ankyrin repeat protein.
  
 
   0.452
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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