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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0476Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. (318 aa)    
Predicted Functional Partners:
pntAA
NAD(P) transhydrogenase subunit alpha.
       0.789
tycC_2
Non-ribosomal peptide synthase.
     
 0.763
Lcin_1849
acyl-CoA synthetase.
     
 0.757
tycC_1
Peptide synthetase, non-ribosomal.
     
 0.736
Lcin_1779
Peptide synthetase, non-ribosomal.
     
 0.728
Lcin_2834
Peptide synthetase, non-ribosomal.
     
 0.728
pksN
Peptide synthetase, non-ribosomal.
     
 0.722
Lcin_1466
Non-ribosomal peptide synthase.
     
 0.697
Lcin_2737
Non-ribosomal peptide synthetase.
     
 0.697
lgrD_2
Peptide synthetase, non-ribosomal.
     
 0.692
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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