STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0476Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. (318 aa)    
Predicted Functional Partners:
tycC_2
Non-ribosomal peptide synthase.
     
 0.966
pntAA
NAD(P) transhydrogenase subunit alpha.
       0.799
Lcin_1849
acyl-CoA synthetase.
     
 0.792
tycC_1
Peptide synthetase, non-ribosomal.
     
 0.790
pksN
Peptide synthetase, non-ribosomal.
     
  0.773
Lcin_1779
Peptide synthetase, non-ribosomal.
     
 0.715
Lcin_2834
Peptide synthetase, non-ribosomal.
     
 0.715
rkpA
Type I polyketide synthase WcbR.
    
 0.605
Lcin_1466
Non-ribosomal peptide synthase.
     
  0.586
Lcin_2737
Non-ribosomal peptide synthetase.
     
  0.586
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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