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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0484Carboxymuconolactone decarboxylase. (184 aa)    
Predicted Functional Partners:
Lcin_1615
Carboxymuconolactone decarboxylase family transporter; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
    
 0.529
oprM
Outer membrane efflux protein.
       0.521
Lcin_2945
Pyridine nucleotide-disulfide oxidoreductase.
 
  
  0.490
Lcin_0245
Glyoxalase/bleomycin resistance protein.
  
     0.486
catD_1
Alpha/beta hydrolase.
  
  
  0.455
Lcin_2427
Hydrolase.
  
  
  0.446
hapE
Dimethylaniline monooxygenase.
 
  
  0.441
Lcin_2237
Carotenoid cleavage oxygenase.
  
     0.408
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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