STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0500PAP2 superfamily protein. (277 aa)    
Predicted Functional Partners:
Lcin_0499
Cytochrome oxidase-like protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
 
  0.907
Lcin_1920
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
 
 
  0.849
bcp
Acetylpolyamine aminohydrolase.
  
 
  0.814
Lcin_2804
Ankyrin repeat protein.
  
 
   0.797
Lcin_1157
Calcium-transporting ATPase.
  
   0.794
Lcin_0503
Saframycin Mx1 synthetase B.
 
 
 0.782
Lcin_1019
Putative secreted esterase.
 
     0.770
Lcin_3287
Phospholipase, patatin family.
  
  
  0.770
Lcin_2152
Hypothetical protein.
  
     0.769
Lcin_2218
Hypothetical protein.
  
     0.768
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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