Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lcin_1849 | acpP_2 | Lcin_1849 | Lcin_0505 | acyl-CoA synthetase. | Acyl carrier protein. | 0.952 |
Lcin_1849 | fabD_2 | Lcin_1849 | Lcin_2187 | acyl-CoA synthetase. | Malonyl CoA-ACP transacylase. | 0.999 |
Lcin_1849 | fabF_2 | Lcin_1849 | Lcin_0504 | acyl-CoA synthetase. | 3-oxoacyl-ACP synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.953 |
Lcin_1849 | lgrD_2 | Lcin_1849 | Lcin_1465 | acyl-CoA synthetase. | Peptide synthetase, non-ribosomal. | 0.999 |
Lcin_1849 | nuoC | Lcin_1849 | Lcin_0776 | acyl-CoA synthetase. | NADH dehydrogenase I chain C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | 0.838 |
Lcin_1849 | nuoI | Lcin_1849 | Lcin_0770 | acyl-CoA synthetase. | NADH-quinone oxidoreductase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.966 |
Lcin_1849 | pksN | Lcin_1849 | Lcin_2133 | acyl-CoA synthetase. | Peptide synthetase, non-ribosomal. | 0.999 |
Lcin_1849 | tycC_1 | Lcin_1849 | Lcin_2134 | acyl-CoA synthetase. | Peptide synthetase, non-ribosomal. | 0.999 |
Lcin_1849 | tycC_2 | Lcin_1849 | Lcin_1179 | acyl-CoA synthetase. | Non-ribosomal peptide synthase. | 0.999 |
Lcin_1849 | tycC_4 | Lcin_1849 | Lcin_1778 | acyl-CoA synthetase. | Non-ribosomal peptide synthase. | 0.999 |
acpP_2 | Lcin_1849 | Lcin_0505 | Lcin_1849 | Acyl carrier protein. | acyl-CoA synthetase. | 0.952 |
acpP_2 | fabD_2 | Lcin_0505 | Lcin_2187 | Acyl carrier protein. | Malonyl CoA-ACP transacylase. | 0.968 |
acpP_2 | fabF_2 | Lcin_0505 | Lcin_0504 | Acyl carrier protein. | 3-oxoacyl-ACP synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.902 |
acpP_2 | lgrD_2 | Lcin_0505 | Lcin_1465 | Acyl carrier protein. | Peptide synthetase, non-ribosomal. | 0.875 |
acpP_2 | nuoC | Lcin_0505 | Lcin_0776 | Acyl carrier protein. | NADH dehydrogenase I chain C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | 0.837 |
acpP_2 | nuoI | Lcin_0505 | Lcin_0770 | Acyl carrier protein. | NADH-quinone oxidoreductase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.816 |
acpP_2 | pksN | Lcin_0505 | Lcin_2133 | Acyl carrier protein. | Peptide synthetase, non-ribosomal. | 0.957 |
acpP_2 | tycC_1 | Lcin_0505 | Lcin_2134 | Acyl carrier protein. | Peptide synthetase, non-ribosomal. | 0.922 |
acpP_2 | tycC_2 | Lcin_0505 | Lcin_1179 | Acyl carrier protein. | Non-ribosomal peptide synthase. | 0.985 |
acpP_2 | tycC_4 | Lcin_0505 | Lcin_1778 | Acyl carrier protein. | Non-ribosomal peptide synthase. | 0.875 |
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