STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0797Serine protein kinase. (643 aa)    
Predicted Functional Partners:
spo
SpoVR family protein.
 
  
 0.993
Lcin_0798
Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family.
 
  
 0.992
yvgN
Oxidoreductase,aldo/keto reductase family.
   
    0.570
ytbE
Aldo/keto reductase-like diketogulonate reductase.
   
    0.570
katA
Catalase; Belongs to the catalase family.
   
  
 0.544
wrbA
Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family.
   
    0.536
pepN_2
Aminopeptidase.
       0.522
dps2_1
DNA-binding protein; Belongs to the Dps family.
   
    0.510
dps2_2
Ferritin; Belongs to the Dps family.
   
    0.510
phoH
PhoH protein.
   
  
 0.492
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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