STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0801Aminopeptidase. (402 aa)    
Predicted Functional Partners:
Lcin_2019
Glucan 1,4-alpha-glucosidase.
  
     0.720
Lcin_0802
Hypothetical protein.
       0.683
bprV_2
Serine protease, subtilase family.
  
  
 0.571
Lcin_1838
Putative biotin synthetase like protein.
  
     0.553
bprV_1
Serine protease, subtilase family.
  
  
 0.548
aprX
Subtilisin-like serine protease.
  
  
 0.489
letS
Legionella transmission sensor LetS.
  
 
   0.484
cpxA_1
Sensor histidine kinase.
  
 
   0.480
ribA_1
GTP cyclohydrolase II.
  
     0.454
hutG
Formimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
    
   0.437
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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