Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lcin_0816Electron transfer oxidoreductase. (500 aa)    
Predicted Functional Partners:
tycC_2
Non-ribosomal peptide synthase.
    
 0.712
etfB
Electron transfer flavoprotein beta-subunit (Beta-ETF).
  
 
 0.663
Lcin_1849
acyl-CoA synthetase.
    
 0.647
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.638
etfD
Electron transfer flavoprotein-ubiquinon; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.635
tycC_1
Peptide synthetase, non-ribosomal.
    
 0.610
pksN
Peptide synthetase, non-ribosomal.
    
 0.513
Lcin_0815
Hypothetical protein.
       0.505
etfA
Electron transfer flavoprotein, alpha subunit.
  
 
 0.491
rkpA
Type I polyketide synthase WcbR.
   
 0.452
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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