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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0830Oxidoreductase. (372 aa)    
Predicted Functional Partners:
iolE
Myo-inositol catabolism protein iolE.
 
 
 0.850
Lcin_0831
Methyltransferase.
 
     0.808
arnB
Polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.742
iolD
Malonic semialdehyde oxidative decarboxylase; Belongs to the TPP enzyme family.
 
  
 0.715
rfbF
Glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase).
 
    0.651
araB
L-arabinolactonase.
 
 
 0.626
iolCB
IolC/IolB transferase kinase protein.
 
 
 0.615
rfbG
CDP-glucose 4,6-dehydratase.
  
 
  0.595
rebM
Methyltransferase.
       0.575
Lcin_0834
O antigen biosynthesis protein.
       0.573
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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