STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0831Methyltransferase. (426 aa)    
Predicted Functional Partners:
rfbF
Glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase).
 
    0.871
rfbG
CDP-glucose 4,6-dehydratase.
 
  
  0.852
Lcin_0830
Oxidoreductase.
 
     0.808
ubiB
Ubiquinone biosynthesis protein; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
    
 0.731
coq7
Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
   
 0.712
Lcin_0503
Saframycin Mx1 synthetase B.
  
 
 0.695
rebM
Methyltransferase.
  
 0.677
visC
Oxidoreductase with FAD/NAD(P)-binding domain protein.
    
 0.637
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase.
    
 0.637
Lcin_0895
Hypothetical protein.
    
 0.626
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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