STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0900O-methyltransferase. (325 aa)    
Predicted Functional Partners:
Lcin_0899
Eukaryotic small stress protein PASS1.
  
    0.789
tycC_2
Non-ribosomal peptide synthase.
    
 0.721
Lcin_0503
Saframycin Mx1 synthetase B.
  
 
 0.626
Lcin_1849
acyl-CoA synthetase.
 
  
 0.620
pksM
Polyketide synthase.
  
  
 0.614
rkpA
Type I polyketide synthase WcbR.
     
 0.593
tycC_1
Peptide synthetase, non-ribosomal.
    
 0.580
pdhB_1
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
     
 0.565
Lcin_1779
Peptide synthetase, non-ribosomal.
     
 0.530
Lcin_2834
Peptide synthetase, non-ribosomal.
     
 0.530
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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