STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0933Outer membrane efflux protein. (522 aa)    
Predicted Functional Partners:
acrA_1
Membrane-fusion protein AcrA.
 
  0.955
macB_2
ABC transporter permease.
 
 
  0.929
Lcin_0935
Putative helicase/relaxase.
 
    0.906
macB_1
ABC transporter ATP-binding protein.
   
  0.882
apaH
Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
       0.792
secA_3
Coiled-coil protein.
  
     0.761
iraA
Small-molecule methyltransferase IraA.
  
     0.758
Lcin_3155
Ankyrin repeats (3 copies).
  
     0.731
Lcin_0196
CAAX amino terminal protease self- immunity.
  
     0.727
Lcin_1831
Sphingomyelin phosphodiesterase.
  
     0.722
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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