STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0957Ankyrin repeat protein. (817 aa)    
Predicted Functional Partners:
Lcin_2239
Hypothetical protein.
    
  0.834
pksM
Polyketide synthase.
  
 
  0.789
traI_3
Putative conjugative transfer protein TraI.
  
 
   0.786
Lcin_0402
Hypothetical protein.
  
 
   0.782
traI
TraI protein.
  
 
   0.780
Lcin_3028
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.774
Lcin_0156
Putative aminoglycoside phosphotransferase.
  
     0.773
noc
Nucleoid occlusion protein; Belongs to the ParB family.
  
     0.770
Lcin_1525
Putative sex pilus assembly and mating pair protein TraG.
  
     0.770
Lcin_1661
Protein kinase.
  
     0.769
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.