ahpC_1 protein (Legionella cincinnatiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ahpC_1

Alkyl hydroperoxide reductase. (201 aa)

Predicted Functional Partners:

trxB

0.837

sodB

0.809

grlA

0.762

dnaK

0.734

bcp_1

0.719

sodC

0.703

btuE

0.666

fur

0.622

katA

0.595

dipZ

0.587

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ahpC_1	bcp_1	Lcin_0991	Lcin_0848	Alkyl hydroperoxide reductase.	Bacterioferritin comigratory protein.	0.719
ahpC_1	btuE	Lcin_0991	Lcin_1703	Alkyl hydroperoxide reductase.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.666
ahpC_1	dipZ	Lcin_0991	Lcin_2337	Alkyl hydroperoxide reductase.	Cytochrome C biogenesis protein.	0.587
ahpC_1	dnaK	Lcin_0991	Lcin_2304	Alkyl hydroperoxide reductase.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.734
ahpC_1	fur	Lcin_0991	Lcin_0596	Alkyl hydroperoxide reductase.	Ferric uptake regulation protein; Belongs to the Fur family.	0.622
ahpC_1	grlA	Lcin_0991	Lcin_0992	Alkyl hydroperoxide reductase.	Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily.	0.762
ahpC_1	katA	Lcin_0991	Lcin_2151	Alkyl hydroperoxide reductase.	Catalase; Belongs to the catalase family.	0.595
ahpC_1	sodB	Lcin_0991	Lcin_0993	Alkyl hydroperoxide reductase.	Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.809
ahpC_1	sodC	Lcin_0991	Lcin_2295	Alkyl hydroperoxide reductase.	Superoxide dismutase, Cu, Zn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.703
ahpC_1	trxB	Lcin_0991	Lcin_2857	Alkyl hydroperoxide reductase.	Thioredoxin reductase.	0.837
bcp_1	ahpC_1	Lcin_0848	Lcin_0991	Bacterioferritin comigratory protein.	Alkyl hydroperoxide reductase.	0.719
bcp_1	trxB	Lcin_0848	Lcin_2857	Bacterioferritin comigratory protein.	Thioredoxin reductase.	0.470
btuE	ahpC_1	Lcin_1703	Lcin_0991	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Alkyl hydroperoxide reductase.	0.666
btuE	dipZ	Lcin_1703	Lcin_2337	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Cytochrome C biogenesis protein.	0.466
btuE	katA	Lcin_1703	Lcin_2151	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Catalase; Belongs to the catalase family.	0.616
btuE	sodB	Lcin_1703	Lcin_0993	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.883
btuE	sodC	Lcin_1703	Lcin_2295	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Superoxide dismutase, Cu, Zn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.814
dipZ	ahpC_1	Lcin_2337	Lcin_0991	Cytochrome C biogenesis protein.	Alkyl hydroperoxide reductase.	0.587
dipZ	btuE	Lcin_2337	Lcin_1703	Cytochrome C biogenesis protein.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.466
dipZ	dnaK	Lcin_2337	Lcin_2304	Cytochrome C biogenesis protein.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.623