STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0997Serine/threonine-protein kinase. (639 aa)    
Predicted Functional Partners:
Lcin_1011
Thaumatin domain-containing protein.
  
     0.749
evgS_2
Sensor histidine kinase.
  
 
 0.678
arcB_4
Sensory box histidine kinase/response regulator.
     
 0.602
arcB_1
Sensory histidine-kinase / response regulator.
     
 0.602
gmr_2
Sensory box/GGDEF domain protein.
     
 0.591
letS
Legionella transmission sensor LetS.
  
  
 0.582
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
 
 
  0.527
Lcin_0095
PPR repeat protein.
  
     0.510
Lcin_0579
PPR repeat protein.
  
     0.499
yveA_1
Amino acid permease.
       0.486
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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