STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1003Transmembrane protein (fibronectin III domain and Gp5 C-terminal repeat). (603 aa)    
Predicted Functional Partners:
celC
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.997
Lcin_1005
Glycosyl hydrolase family 18; Belongs to the glycosyl hydrolase 18 family.
  
 0.922
ctpA
Carboxy-terminal protease; Belongs to the peptidase S41A family.
   
  0.837
ftsK
DNA translocase FtsK.
    
 
 0.837
Lcin_1110
Hypothetical protein.
  
 0.756
pglA
Glycoside hydrolase family 28 protein / polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
 0.735
bprV_2
Serine protease, subtilase family.
  
 0.724
bprV_1
Serine protease, subtilase family.
  
 0.723
amiB
N-acetylmuramoyl-L-alanine amidase.
    
 0.683
aprX
Subtilisin-like serine protease.
   
 0.679
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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