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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndoADioxygenase, ferredoxin subunit. (117 aa)    
Predicted Functional Partners:
xylA
Xylene monooxygenase.
 
  
 0.808
pacS
Cation transport ATPase.
   
  0.774
Lcin_2235
Hypothetical protein.
    
  0.770
fadH
2,4-dienoyl-CoA reductase.
     
 0.732
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
 0.688
rkpA
Type I polyketide synthase WcbR.
  
 
 0.688
kshA
Rieske 2Fe-2S domain protein.
 
  
 0.687
fmdA
Amidase.
  
  
  0.660
pdhB_1
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
     
 0.644
glnA
Glutamine synthetase.
     
 0.598
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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