STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
strB1Inosamine-phosphate amidinotransferase 1. (373 aa)    
Predicted Functional Partners:
argF
Ornithine carbamoyltransferase.
 
  
  0.762
Lcin_0501
Ankyrin repeats (3 copies).
  
     0.758
Lcin_2511
Hypothetical protein.
  
     0.748
Lcin_3426
Putative protoheme IX biogenesis protein.
  
     0.728
Lcin_2293
Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system).
  
     0.723
spkD
Serine/threonine-protein kinase D.
  
     0.705
Lcin_1228
Substrate of the Dot/Icm secretion system.
  
     0.698
Lcin_2086
Ankyrin repeat protein.
  
     0.696
Lcin_2695
Ankyrin repeat protein.
  
     0.688
pvdA
L-ornithine 5-monooxygenase.
 
     0.684
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.