Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1190Hypothetical protein. (67 aa)    
Predicted Functional Partners:
intS_5
Phage integrase; Belongs to the 'phage' integrase family.
 
     0.803
Lcin_1108
Reverse transcriptase (RNA-dependent DNA polymerase).
  
     0.656
Lcin_1455
Hypothetical protein.
  
   
 0.617
Lcin_1306
Transposase.
  
     0.479
mqsA
Antitoxin MqsA.
  
   
 0.466
plaA
Lysophospholipase A.
  
     0.417
Lcin_2978
Phosphotransferase enzyme family protein.
  
     0.414
Lcin_1188
BNR/Asp-box repeat containing protein.
       0.413
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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