Lcin_1195 protein (Legionella cincinnatiensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

Lcin_1195

Inner membrane protein. (583 aa)

Predicted Functional Partners:

traC_2-2

0.826

intS_6

0.636

Lcin_1194

0.609

intA

0.579

intS_7

0.493

intS_1

0.484

intS_2

0.475

AlpA_1

0.458

intS_5

0.415

AlpA_2

0.412

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AlpA_1	Lcin_1195	Lcin_2714	Lcin_1195	Prophage CP4-57 regulatory protein (AlpA).	Inner membrane protein.	0.458
AlpA_1	intA	Lcin_2714	Lcin_2716	Prophage CP4-57 regulatory protein (AlpA).	Phage-related integrase; Belongs to the 'phage' integrase family.	0.808
AlpA_1	intS_1	Lcin_2714	Lcin_0115	Prophage CP4-57 regulatory protein (AlpA).	Phage-related integrase; Belongs to the 'phage' integrase family.	0.534
AlpA_1	intS_2	Lcin_2714	Lcin_1176	Prophage CP4-57 regulatory protein (AlpA).	Integrase; Belongs to the 'phage' integrase family.	0.471
AlpA_1	intS_6	Lcin_2714	Lcin_0409	Prophage CP4-57 regulatory protein (AlpA).	Integrase; Belongs to the 'phage' integrase family.	0.748
AlpA_1	intS_7	Lcin_2714	Lcin_2726	Prophage CP4-57 regulatory protein (AlpA).	Integrase; Belongs to the 'phage' integrase family.	0.566
AlpA_1	traC_2-2	Lcin_2714	Lcin_2712	Prophage CP4-57 regulatory protein (AlpA).	5' DNA primase TraC.	0.807
AlpA_2	Lcin_1195	Lcin_0411	Lcin_1195	Prophage CP4-57 regulatory protein (AlpA).	Inner membrane protein.	0.412
AlpA_2	intA	Lcin_0411	Lcin_2716	Prophage CP4-57 regulatory protein (AlpA).	Phage-related integrase; Belongs to the 'phage' integrase family.	0.647
AlpA_2	intS_1	Lcin_0411	Lcin_0115	Prophage CP4-57 regulatory protein (AlpA).	Phage-related integrase; Belongs to the 'phage' integrase family.	0.533
AlpA_2	intS_2	Lcin_0411	Lcin_1176	Prophage CP4-57 regulatory protein (AlpA).	Integrase; Belongs to the 'phage' integrase family.	0.494
AlpA_2	intS_6	Lcin_0411	Lcin_0409	Prophage CP4-57 regulatory protein (AlpA).	Integrase; Belongs to the 'phage' integrase family.	0.874
AlpA_2	intS_7	Lcin_0411	Lcin_2726	Prophage CP4-57 regulatory protein (AlpA).	Integrase; Belongs to the 'phage' integrase family.	0.565
Lcin_1194	Lcin_1195	Lcin_1194	Lcin_1195	Hypothetical protein.	Inner membrane protein.	0.609
Lcin_1195	AlpA_1	Lcin_1195	Lcin_2714	Inner membrane protein.	Prophage CP4-57 regulatory protein (AlpA).	0.458
Lcin_1195	AlpA_2	Lcin_1195	Lcin_0411	Inner membrane protein.	Prophage CP4-57 regulatory protein (AlpA).	0.412
Lcin_1195	Lcin_1194	Lcin_1195	Lcin_1194	Inner membrane protein.	Hypothetical protein.	0.609
Lcin_1195	intA	Lcin_1195	Lcin_2716	Inner membrane protein.	Phage-related integrase; Belongs to the 'phage' integrase family.	0.579
Lcin_1195	intS_1	Lcin_1195	Lcin_0115	Inner membrane protein.	Phage-related integrase; Belongs to the 'phage' integrase family.	0.484
Lcin_1195	intS_2	Lcin_1195	Lcin_1176	Inner membrane protein.	Integrase; Belongs to the 'phage' integrase family.	0.475