STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1290Glycosyltransferase. (400 aa)    
Predicted Functional Partners:
Lcin_1289
Glycosyl transferase.
 
  0.880
Lcin_1387
Dolichyl-phosphate mannosyltransferase.
 
  0.809
wbbL
Putative glycosyl transferase.
 
 
 0.793
arnT
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
 
 0.621
Lcin_1288
Polysaccharide deacetylase.
  
 
  0.585
gpmA
Phosphoglycerate mutase.
  
 
  0.537
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.535
yfdH_2
Bactoprenol glucosyl transferase.
  
  
  0.515
Lcin_1291
Coiled-coil protein.
       0.509
rkpA
Type I polyketide synthase WcbR.
  
 0.446
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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