metB protein (Legionella cincinnatiensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

metB

Cystathionine beta-lyase. (384 aa)

Predicted Functional Partners:

cysK

0.994

sahH

0.883

Lcin_2700

0.875

sdhL

0.872

metG

0.871

Lcin_2365

0.868

metX

0.865

trxB

0.861

pepN_2

0.852

gshA

0.851

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lcin_2365	cysK	Lcin_2365	Lcin_0974	Adenosylhomocysteinase.	Cystathionine beta-synthase.	0.874
Lcin_2365	metB	Lcin_2365	Lcin_1359	Adenosylhomocysteinase.	Cystathionine beta-lyase.	0.868
Lcin_2365	sahH	Lcin_2365	Lcin_2300	Adenosylhomocysteinase.	Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.887
Lcin_2700	cysK	Lcin_2700	Lcin_0974	Aspartate aminotransferase.	Cystathionine beta-synthase.	0.858
Lcin_2700	gshA	Lcin_2700	Lcin_1559	Aspartate aminotransferase.	Glutamate--cysteine ligase.	0.848
Lcin_2700	metB	Lcin_2700	Lcin_1359	Aspartate aminotransferase.	Cystathionine beta-lyase.	0.875
Lcin_2700	metX	Lcin_2700	Lcin_0493	Aspartate aminotransferase.	Alpha/beta hydrolase.	0.440
Lcin_2700	pepN_2	Lcin_2700	Lcin_0796	Aspartate aminotransferase.	Aminopeptidase.	0.848
cysK	Lcin_2365	Lcin_0974	Lcin_2365	Cystathionine beta-synthase.	Adenosylhomocysteinase.	0.874
cysK	Lcin_2700	Lcin_0974	Lcin_2700	Cystathionine beta-synthase.	Aspartate aminotransferase.	0.858
cysK	gshA	Lcin_0974	Lcin_1559	Cystathionine beta-synthase.	Glutamate--cysteine ligase.	0.851
cysK	metB	Lcin_0974	Lcin_1359	Cystathionine beta-synthase.	Cystathionine beta-lyase.	0.994
cysK	metX	Lcin_0974	Lcin_0493	Cystathionine beta-synthase.	Alpha/beta hydrolase.	0.782
cysK	pepN_2	Lcin_0974	Lcin_0796	Cystathionine beta-synthase.	Aminopeptidase.	0.848
cysK	sahH	Lcin_0974	Lcin_2300	Cystathionine beta-synthase.	Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.892
cysK	sdhL	Lcin_0974	Lcin_3088	Cystathionine beta-synthase.	L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	0.612
gshA	Lcin_2700	Lcin_1559	Lcin_2700	Glutamate--cysteine ligase.	Aspartate aminotransferase.	0.848
gshA	cysK	Lcin_1559	Lcin_0974	Glutamate--cysteine ligase.	Cystathionine beta-synthase.	0.851
gshA	metB	Lcin_1559	Lcin_1359	Glutamate--cysteine ligase.	Cystathionine beta-lyase.	0.851
gshA	pepN_2	Lcin_1559	Lcin_0796	Glutamate--cysteine ligase.	Aminopeptidase.	0.855