STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degPDegP protease (Do-like, S2-serine-like). (358 aa)    
Predicted Functional Partners:
Lcin_0095
PPR repeat protein.
 
 0.733
Lcin_0579
PPR repeat protein.
 
 0.717
ycaC_2
YcaC related amidohydrolase.
       0.645
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
    
 0.619
Lcin_1363
Hypothetical protein.
       0.619
evgS_2
Sensor histidine kinase.
  
  
 0.557
Lcin_3011
Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system).
  
 
  0.541
Lcin_2660
5'-nucleotidase.
  
     0.533
fabG_7
3-hydroxyacyl-CoA dehydrogenase.
   
  0.521
Lcin_1554
Ankyrin repeat-containing protein.
 
 
 0.519
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.