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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smc_1Chromosome partition protein Smc. (478 aa)    
Predicted Functional Partners:
bcp
Acetylpolyamine aminohydrolase.
  
 
  0.846
pieE_1
Substrate of the Dot/Icm secretion system.
  
     0.770
Lcin_1157
Calcium-transporting ATPase.
  
 
   0.741
Lcin_2475
Acid sphingomyelinase-like phosphodiesterase.
  
  
  0.740
evgS_2
Sensor histidine kinase.
  
 0.739
Lcin_1013
Serine carboxypeptidase.
  
     0.736
Lcin_1920
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
 
     0.714
Lcin_2980
Tubulin-tyrosine ligase family protein.
  
     0.712
Lcin_2152
Hypothetical protein.
  
     0.708
scpA
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
   
 
 0.699
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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