STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilMTfp pilus assembly protein, ATPase PilM. (364 aa)    
Predicted Functional Partners:
pilN
Tfp pilus assembly protein PilN.
 
 0.999
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
 
 0.993
pilO
Tfp pilus assembly protein PilO.
 
 
 0.992
pilP
Tfp pilus assembly protein PilP.
 
  
 0.980
pilE_1
Type-IV pilin.
 
   
 0.860
pilC
Pilus assembly protein PilC.
 
 
 
 0.858
pilZ_1
Type 4 fimbrial biogenesis protein PilZ.
  
   
 0.852
pilB
Pilus assembly protein PilB.
 
 
 
 0.803
fimV
FimV protein.
  
  
 0.782
yggR
Transporter.
 
   
 0.763
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.