pilQ protein (Legionella cincinnatiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pilQ

Type IV pilus (Tfp) assembly protein PilQ. (695 aa)

Predicted Functional Partners:

pilP

0.998

pilN

0.996

pilM

0.992

pilO

0.989

pilC

0.903

pilB

0.870

pilE_1

0.793

lspF

0.771

lspD

0.767

lspE

0.761

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lspD	lspE	Lcin_2524	Lcin_2523	Type II protein secretion LspD.	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.982
lspD	lspF	Lcin_2524	Lcin_0391	Type II protein secretion LspD.	Type II secretory pathway protein LspF.	0.934
lspD	pilB	Lcin_2524	Lcin_0252	Type II protein secretion LspD.	Pilus assembly protein PilB.	0.459
lspD	pilC	Lcin_2524	Lcin_0253	Type II protein secretion LspD.	Pilus assembly protein PilC.	0.487
lspD	pilQ	Lcin_2524	Lcin_1395	Type II protein secretion LspD.	Type IV pilus (Tfp) assembly protein PilQ.	0.767
lspE	lspD	Lcin_2523	Lcin_2524	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Type II protein secretion LspD.	0.982
lspE	lspF	Lcin_2523	Lcin_0391	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Type II secretory pathway protein LspF.	0.988
lspE	pilC	Lcin_2523	Lcin_0253	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Pilus assembly protein PilC.	0.962
lspE	pilM	Lcin_2523	Lcin_1391	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Tfp pilus assembly protein, ATPase PilM.	0.699
lspE	pilN	Lcin_2523	Lcin_1392	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Tfp pilus assembly protein PilN.	0.776
lspE	pilO	Lcin_2523	Lcin_1393	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Tfp pilus assembly protein PilO.	0.699
lspE	pilP	Lcin_2523	Lcin_1394	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Tfp pilus assembly protein PilP.	0.686
lspE	pilQ	Lcin_2523	Lcin_1395	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Type IV pilus (Tfp) assembly protein PilQ.	0.761
lspF	lspD	Lcin_0391	Lcin_2524	Type II secretory pathway protein LspF.	Type II protein secretion LspD.	0.934
lspF	lspE	Lcin_0391	Lcin_2523	Type II secretory pathway protein LspF.	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.988
lspF	pilB	Lcin_0391	Lcin_0252	Type II secretory pathway protein LspF.	Pilus assembly protein PilB.	0.988
lspF	pilM	Lcin_0391	Lcin_1391	Type II secretory pathway protein LspF.	Tfp pilus assembly protein, ATPase PilM.	0.699
lspF	pilN	Lcin_0391	Lcin_1392	Type II secretory pathway protein LspF.	Tfp pilus assembly protein PilN.	0.699
lspF	pilO	Lcin_0391	Lcin_1393	Type II secretory pathway protein LspF.	Tfp pilus assembly protein PilO.	0.699
lspF	pilP	Lcin_0391	Lcin_1394	Type II secretory pathway protein LspF.	Tfp pilus assembly protein PilP.	0.686