Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kshARieske 2Fe-2S domain protein. (330 aa)    
Predicted Functional Partners:
xylA
Xylene monooxygenase.
  
 
 0.928
Lcin_1438
Hypothetical protein.
 
     0.849
Lcin_1437
Hypothetical protein.
 
     0.833
Lcin_3428
CMP-N-acetylneuraminate monooxygenase.
 
  
 0.639
Lcin_1744
Epi-isozizaene 5-monooxygenase/(E)-beta-farnesene synthase.
 
  
 0.638
fadH
2,4-dienoyl-CoA reductase.
    
  0.635
ndoA
Dioxygenase, ferredoxin subunit.
 
  
 0.622
Lcin_2237
Carotenoid cleavage oxygenase.
  
   
 0.618
Lcin_2419
Dihydroorotate dehydrogenase electron transfer subunit.
  
 
 0.617
Lcin_1802
Cytochrome P450.
 
  
 0.589
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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