STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1437Hypothetical protein. (362 aa)    
Predicted Functional Partners:
Lcin_1438
Hypothetical protein.
     0.957
kshA
Rieske 2Fe-2S domain protein.
 
     0.833
moeZ_2
Thiazole biosynthesis adenylyltransferase ThiF.
       0.492
Lcin_2594
Coenzyme F390 synthetase FtsA.
 
     0.467
cphA_1
Cyanophycin synthetase.
    
  0.438
cphA_2
Cyanophycin synthetase.
    
  0.438
gshA
Glutamate--cysteine ligase.
    
 0.434
argF
Ornithine carbamoyltransferase.
    
  0.422
ggt
Gamma-glutamyltranspeptidase.
     
 0.414
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
    
  0.412
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.