STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1455Hypothetical protein. (86 aa)    
Predicted Functional Partners:
Lcin_1454
Antitoxin HipB.
       0.791
Lcin_3162
Transposase.
  
     0.629
Lcin_1190
Hypothetical protein.
  
   
 0.617
Lcin_1108
Reverse transcriptase (RNA-dependent DNA polymerase).
  
     0.599
Lcin_2978
Phosphotransferase enzyme family protein.
  
     0.572
Lcin_2723
Protein LvrA.
  
     0.558
Lcin_2248
Putative Transposase (IS4 family).
  
     0.520
Lcin_0558
Putative Antitoxin higA-2.
   
 
 0.471
mqsA
Antitoxin MqsA.
   
 
 0.471
Lcin_1453
Hypothetical protein.
       0.427
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.