STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traI_3Putative conjugative transfer protein TraI. (1945 aa)    
Predicted Functional Partners:
addA
UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
 0.949
Lcin_0402
Hypothetical protein.
  
   0.806
Lcin_0957
Ankyrin repeat protein.
  
 
   0.790
Lcin_3077
Ankyrin repeat protein.
  
 
   0.789
Lcin_1520
Putative conjugative transfer protein TrbC.
 
     0.780
Lcin_1525
Putative sex pilus assembly and mating pair protein TraG.
 
     0.779
Lcin_1521
Conjugal transfer mating pair stabilization protein TraN.
 
    0.778
Lcin_1514
Putative conjugative transfer protein TraB.
 
     0.777
traF
Conjugal transfer protein TraF.
 
     0.776
Lcin_3028
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.774
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.