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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1511Putative conjugative transfer protein TraL. (96 aa)    
Predicted Functional Partners:
traA
Putative fimbrial protein precursor (Pilin).
       0.792
Lcin_1512
Putative conjugative transfer protein TraE.
       0.792
Lcin_1513
Putative conjugative transfer protein TraK.
       0.791
Lcin_1514
Putative conjugative transfer protein TraB.
       0.670
Lcin_1515
Putative Type IV conjugative transfer system protein TraV.
       0.670
Lcin_1517
Putative TrbI protein.
       0.602
Lcin_1518
Putative conjugative transfer protein TraW.
       0.602
Lcin_1520
Putative conjugative transfer protein TrbC.
       0.588
Lcin_1521
Conjugal transfer mating pair stabilization protein TraN.
       0.588
Lcin_1522
Putative conjugative transfer protein TraF.
       0.588
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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