STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1520Putative conjugative transfer protein TrbC. (221 aa)    
Predicted Functional Partners:
Lcin_1521
Conjugal transfer mating pair stabilization protein TraN.
 
     0.962
Lcin_1522
Putative conjugative transfer protein TraF.
 
     0.962
Lcin_1525
Putative sex pilus assembly and mating pair protein TraG.
 
     0.962
Lcin_1518
Putative conjugative transfer protein TraW.
 
     0.959
Lcin_1524
Putative conjugative transfer protein TraH.
 
     0.950
Lcin_1514
Putative conjugative transfer protein TraB.
 
     0.947
traC_4
Putative conjugative transfer protein TraC.
 
     0.944
Lcin_1519
Putative conjugative transfer protein TraU.
 
     0.941
traD_3
Conjugative transfer protein TraD.
 
     0.903
Lcin_1523
Putative conjugative transfer protein TrbB.
       0.840
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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