Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yeeA_2Inner membrane protein. (341 aa)    
Predicted Functional Partners:
yiaV_3
Hemolysin D.
  
 
 0.895
oprM_4
Outer membrane efflux protein.
    
  0.837
yibH
Hemolysin D.
 
 
 0.636
Lcin_2874
Putative iron-sulpher cluster proteins NifU.
   
    0.575
nifU
NifU family FeS assembly SUF system protein.
   
    0.575
Lcin_2218
Hypothetical protein.
  
     0.553
Lcin_2475
Acid sphingomyelinase-like phosphodiesterase.
  
     0.551
Lcin_1157
Calcium-transporting ATPase.
  
     0.527
yveA_3
Amino acid permease.
  
     0.524
Lcin_1920
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
  
     0.520
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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