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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1584Chitin-binding protein. (235 aa)    
Predicted Functional Partners:
Lcin_1005
Glycosyl hydrolase family 18; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.857
Lcin_3001
Glycosyl hydrolases family 18; Belongs to the glycosyl hydrolase 18 family.
 
 
 0.781
Lcin_2419
Dihydroorotate dehydrogenase electron transfer subunit.
  
     0.635
pta
Phosphate acetyl/butaryl transferase.
       0.627
ackA
Acetate kinase (Acetokinase); Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.592
Lcin_0508
Hypothetical protein.
  
     0.581
dsbG
NHL repeat protein.
  
     0.563
Lcin_1503
Putative Glutathione synthetase ATP-binding domain-like protein.
  
     0.555
Lcin_0273
3-deoxy-D-manno-octulosonic-acid kinase.
  
     0.546
sseJ_1
Phospholipase/lecithinase/hemolysin.
  
     0.542
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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