STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1599Pyruvate phosphate dikinase. (1347 aa)    
Predicted Functional Partners:
npr
Phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr).
  
 0.976
Lcin_1271
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.772
Lcin_2601
6,7-dimethyl-8-ribityllumazine synthase; Belongs to the DMRL synthase family.
 
    0.772
Lcin_2470
Ankyrin repeat protein.
 
     0.763
Lcin_1011
Thaumatin domain-containing protein.
 
     0.745
Lcin_0303
Multidrug resistance protein MdtN.
  
     0.720
Lcin_3428
CMP-N-acetylneuraminate monooxygenase.
 
  
 0.710
sodB
Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.699
hlyB
ABC transporter.
  
     0.697
Lcin_2287
Hypothetical protein.
  
     0.693
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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