Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttgC_1Outer membrane efflux protein. (469 aa)    
Predicted Functional Partners:
emrA_1
Multidrug efflux system.
 
  0.920
emrB_1
Multidrug efflux system protein; Belongs to the major facilitator superfamily.
 
  0.865
ttgC_2
Outer membrane efflux protein.
  
  
  0.861
lmxE
Efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.808
mdtA
Multidrug efflux system, subunit A; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.790
oprM
Outer membrane efflux protein.
  
     0.774
lmxF
Multidrug efflux pump.
 
  0.725
Lcin_1620
Hypothetical protein.
       0.719
ttgC_5
Outer membrane efflux protein.
  
  
 
0.705
mdtP
Outer membrane efflux lipoprotein.
  
  
 
0.690
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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