STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frgASiderophore biosynthetic enzyme FrgA. (576 aa)    
Predicted Functional Partners:
iucD
L-lysine N6-monooxygenase.
 
 
 0.916
iucB
N(6)-hydroxylysine O-acetyltransferase.
 
 
 0.880
pvdA
L-ornithine 5-monooxygenase.
 
 
 0.840
tycC_2
Non-ribosomal peptide synthase.
  
 
 0.791
aacA-aphD
GNAT family acetyltransferase.
  
 
 0.763
Lcin_2804
Ankyrin repeat protein.
  
     0.601
Lcin_2152
Hypothetical protein.
  
     0.576
Lcin_3155
Ankyrin repeats (3 copies).
  
     0.570
bcp
Acetylpolyamine aminohydrolase.
  
     0.542
Lcin_1958
Hypothetical protein.
  
     0.534
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.