Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atsAcetyltransferase (GNAT) family protein. (154 aa)    
Predicted Functional Partners:
csiR
HTH-type transcriptional repressor CsiR.
 
     0.703
metG_2
methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.678
Lcin_1693
Cupin domain protein.
       0.678
iucD
L-lysine N6-monooxygenase.
       0.657
Lcin_1174
Hypothetical protein.
   
   0.519
Lcin_1695
Dot/Icm secretion system substrate.
       0.483
Lcin_2563
Glycoprotease.
  
 
 0.407
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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