Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lcin_1715Carotenoid cleavage oxygenase. (459 aa)    
Predicted Functional Partners:
kshA
Rieske 2Fe-2S domain protein.
  
   
 0.579
yqjG
S-transferase.
       0.564
Lcin_1804
Hypothetical protein.
  
     0.526
indA
AraC family transcriptional regulator; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
       0.508
psuK
Carbohydrate kinase, pfkB family.
       0.508
Lcin_2740
Oxidoreductase.
  
     0.467
rkpA
Type I polyketide synthase WcbR.
  
  
 0.461
Lcin_2893
Hypothetical protein.
  
     0.419
tcmN_2
O-methyltransferase.
  
     0.414
Lcin_2138
Hypothetical protein.
  
     0.410
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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