Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
Lcin_1725Chromate transport protein. (152 aa)    
Predicted Functional Partners:
Lcin_1726
Hypothetical protein.
       0.729
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
       0.720
fadE_1
Acyl coenzyme A dehydrogenase.
       0.642
Lcin_1728
Substrate of the Dot/Icm secretion system.
       0.557
iraA
Small-molecule methyltransferase IraA.
  
     0.547
Lcin_1758
Hypothetical protein.
  
     0.519
secA_3
Coiled-coil protein.
  
     0.514
Lcin_0196
CAAX amino terminal protease self- immunity.
  
     0.509
Lcin_1958
Hypothetical protein.
  
     0.508
copA_1
Cation transport ATPase.
     
 0.501
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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