STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1736Hypothetical protein. (110 aa)    
Predicted Functional Partners:
Lcin_1737
Hypothetical protein.
       0.773
pta
Phosphate acetyl/butaryl transferase.
    
 0.717
cpsB
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
  0.672
pheA_2
Chorismate mutase.
    
  0.661
pdhB_1
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
    
  0.657
pvdA
L-ornithine 5-monooxygenase.
   
 
 0.567
iucD
L-lysine N6-monooxygenase.
   
 
 0.567
Lcin_1024
Phosphotransferase enzyme family protein.
  
 
  0.558
frgA
Siderophore biosynthetic enzyme FrgA.
  
 
 0.529
lysAC
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
 0.495
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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