Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1736Hypothetical protein. (110 aa)    
Predicted Functional Partners:
Lcin_1737
Hypothetical protein.
       0.773
pheA_2
Chorismate mutase.
    
  0.552
Lcin_1271
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
  0.542
Lcin_1024
Phosphotransferase enzyme family protein.
  
 
  0.520
pdhB_1
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
    
  0.518
pta
Phosphate acetyl/butaryl transferase.
    
 0.512
cpsB
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.478
lysAC
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
 0.466
Lcin_0161
Aminoglycoside 3-N-acetyltransferase.
    
  0.450
Lcin_2548
Aminoglycoside 3-N-acetyltransferase.
    
  0.450
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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