STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1745Hypothetical protein. (231 aa)    
Predicted Functional Partners:
Lcin_1739
Capsule biosynthesis protein.
 
     0.626
dacB_2
D-Ala-D-Ala carboxypeptidase.
 
  
  0.552
dacB_1
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
  
  0.550
Lcin_1744
Epi-isozizaene 5-monooxygenase/(E)-beta-farnesene synthase.
       0.510
Lcin_1746
Hypothetical protein.
       0.506
Lcin_1741
Hypothetical protein.
       0.503
Lcin_1742
Condensation domain protein.
       0.503
Lcin_1743
Hypothetical protein.
       0.503
Lcin_1738
Hypothetical protein.
       0.500
desA
Delta(12)-fatty-acid desaturase.
       0.500
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.