Lcin_1747 protein (Legionella cincinnatiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lcin_1747

Hypothetical protein. (237 aa)

Predicted Functional Partners:

cynT_2

0.650

ychM_2

0.569

Lcin_1746

0.544

yaeT

0.543

yfiO

0.542

mip

0.523

Lcin_3075

0.453

Lcin_0683

0.404

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lcin_0683	Lcin_1747	Lcin_0683	Lcin_1747	Dienelactone hydrolase.	Hypothetical protein.	0.404
Lcin_1746	Lcin_1747	Lcin_1746	Lcin_1747	Hypothetical protein.	Hypothetical protein.	0.544
Lcin_1747	Lcin_0683	Lcin_1747	Lcin_0683	Hypothetical protein.	Dienelactone hydrolase.	0.404
Lcin_1747	Lcin_1746	Lcin_1747	Lcin_1746	Hypothetical protein.	Hypothetical protein.	0.544
Lcin_1747	Lcin_3075	Lcin_1747	Lcin_3075	Hypothetical protein.	Hypothetical protein.	0.453
Lcin_1747	cynT_2	Lcin_1747	Lcin_1320	Hypothetical protein.	Inorganic transporter and to carbonic anhydrase (bi-functional).	0.650
Lcin_1747	mip	Lcin_1747	Lcin_3089	Hypothetical protein.	Macrophage infectivity potentiator.	0.523
Lcin_1747	yaeT	Lcin_1747	Lcin_2820	Hypothetical protein.	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.543
Lcin_1747	ychM_2	Lcin_1747	Lcin_1233	Hypothetical protein.	Sulfate transporter.	0.569
Lcin_1747	yfiO	Lcin_1747	Lcin_2206	Hypothetical protein.	Competence lipoprotein comL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.542
Lcin_3075	Lcin_1747	Lcin_3075	Lcin_1747	Hypothetical protein.	Hypothetical protein.	0.453
cynT_2	Lcin_1747	Lcin_1320	Lcin_1747	Inorganic transporter and to carbonic anhydrase (bi-functional).	Hypothetical protein.	0.650
mip	Lcin_1747	Lcin_3089	Lcin_1747	Macrophage infectivity potentiator.	Hypothetical protein.	0.523
mip	yaeT	Lcin_3089	Lcin_2820	Macrophage infectivity potentiator.	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.863
mip	yfiO	Lcin_3089	Lcin_2206	Macrophage infectivity potentiator.	Competence lipoprotein comL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.840
yaeT	Lcin_1747	Lcin_2820	Lcin_1747	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Hypothetical protein.	0.543
yaeT	mip	Lcin_2820	Lcin_3089	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Macrophage infectivity potentiator.	0.863
yaeT	yfiO	Lcin_2820	Lcin_2206	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Competence lipoprotein comL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.991
ychM_2	Lcin_1747	Lcin_1233	Lcin_1747	Sulfate transporter.	Hypothetical protein.	0.569
yfiO	Lcin_1747	Lcin_2206	Lcin_1747	Competence lipoprotein comL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Hypothetical protein.	0.542