STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_1759Cytokinin oxidase. (459 aa)    
Predicted Functional Partners:
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.933
Lcin_1758
Hypothetical protein.
 
     0.931
etfA
Electron transfer flavoprotein, alpha subunit.
 
 0.753
etfB
Electron transfer flavoprotein beta-subunit (Beta-ETF).
 
 0.719
pdhB_1
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
    
 0.664
Lcin_1531
Putative Acetyltransferase, GNAT family.
  
 
 0.655
cycA
Cytochrome c.
    
  0.654
lldD
FMN-dependent dehydrogenase.
 
 0.637
Lcin_1599
Pyruvate phosphate dikinase.
 
  
  0.629
xylA
Xylene monooxygenase.
    
 0.577
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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