Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lcin_1793NHL repeat protein. (476 aa)    
Predicted Functional Partners:
aprX
Subtilisin-like serine protease.
  
 
 0.786
ftsK
DNA translocase FtsK.
    
 
 0.777
Lcin_1005
Glycosyl hydrolase family 18; Belongs to the glycosyl hydrolase 18 family.
   
 0.745
ctpA
Carboxy-terminal protease; Belongs to the peptidase S41A family.
   
  0.743
pcp
Serine protease, subtilase family.
       0.733
Lcin_1446
LphB.
  
  
 0.712
Lcin_1831
Sphingomyelin phosphodiesterase.
  
  
  0.677
secA_3
Coiled-coil protein.
  
     0.650
iraA
Small-molecule methyltransferase IraA.
  
     0.644
Lcin_0933
Outer membrane efflux protein.
  
 
  0.626
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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