Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
fhuFFerric iron reductase protein FhuF. (269 aa)    
Predicted Functional Partners:
yhfQ
Periplasmic binding protein.
 
   
 0.917
fhuB
FecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.911
fhuC
Ferrichrome ABC transporter ATP-binding protein.
 
  
 0.857
tauD_2
Taurine catabolism dioxygenase TauD.
 
     0.818
Lcin_0935
Putative helicase/relaxase.
   
    0.808
fecI
Putative RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.713
mbtH
MbtH-like protein.
 
  
 0.678
yojI
ABC transporter, ATP binding/permease protein MsbA.
 
    0.640
tycC_3
Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.503
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
  
 0.464
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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